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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
ChIP-seq
7
ATAC-seq
5
total RNA-seq
1
DNase-seq
Assay category
60
DNA binding
8
DNA accessibility
5
Transcription
Target of assay
37
histone
37
histone modification
20
broad histone mark
16
narrow histone mark
16
transcription factor
7
control
4
RNA binding protein
2
chromatin remodeller
Date released
61
August, 2017
8
February, 2021
2
October, 2019
1
August, 2021
1
February, 2023
Available data
58
bam
55
bigWig
54
fastq
44
bed narrowPeak
14
tagAlign
bed bed3+
4
bed bedgraph
4
tsv
3
bigBed narrowPeak
1
bed broadPeak
1
bigBed broadPeak
Organism
73
Homo sapiens
Biosample type
73
in vitro differentiated cells
Organ
73
connective tissue
Project
73
AMP
Genome assembly (visualization)
53
hg19
46
GRCh38
Lab
72
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Audit category:
5
missing controlled_by
Audit category:
2
inconsistent control read length
files.file_type!
bed bed3+
organ_slims!
heart
BIOSAMPLE
ASSAY
73 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
60
7
5
1
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