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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
ChIP-seq
8
ATAC-seq
5
total RNA-seq
1
Capture-C
1
DNase-seq
Assay category
60
DNA binding
9
DNA accessibility
5
Transcription
Target of assay
36
histone
36
histone modification
20
broad histone mark
18
transcription factor
16
narrow histone mark
6
control
4
RNA binding protein
2
chromatin remodeller
Date released
61
August, 2017
8
February, 2021
2
August, 2021
2
February, 2023
2
October, 2019
Available data
51
bam
50
bigWig
47
fastq
39
bed narrowPeak
14
tagAlign
8
bed bed3+
4
bed bedgraph
4
tsv
3
bigBed narrowPeak
1
bed broadPeak
1
bigBed broadPeak
Organism
75
Homo sapiens
Biosample type
75
in vitro differentiated cells
Organ
75
connective tissue
Project
75
AMP
Genome assembly (visualization)
57
hg19
48
GRCh38
Lab
73
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
files.platform.term_name!
Illumina Genome Analyzer II
BIOSAMPLE
ASSAY
75 results
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ChIP-seq
ATAC-seq
total RNA-seq
Capture-C
DNase-seq
in vitro differentiated cells
adipocyte
60
8
5
1
1
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