Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 60ChIP-seq
  • 4ATAC-seq
  • 4total RNA-seq
  • 1DNase-seq
Assay category
  • 60DNA binding
  • 5DNA accessibility
  • 4Transcription
Target of assay
  • 37histone
  • 37histone modification
  • 20broad histone mark
  • 16narrow histone mark
  • 16transcription factor
  • 7control
  • 4RNA binding protein
  • 2chromatin remodeller
Date released
  • 61August, 2017
  • 8February, 2021
Available data
  • 51bam
  • 47fastq
  • 46bigWig
  • 37bed narrowPeak
  • 14tagAlign
  • 4bed bedgraph
  • 4tsv
  • 1bed broadPeak
  • 1bigBed broadPeak
  • 1bigBed narrowPeak
Organism
  • 69Homo sapiens
Biosample type
  • 69in vitro differentiated cells
Organ
  • 69connective tissue
Project
  • 69AMP
Genome assembly (visualization)
  • 50hg19
  • 46GRCh38
Lab
  • 69AMP-T2D consortium
Audit category:
  • 5missing controlled_by
Audit category:
  • 2inconsistent control read length
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

69 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte60441
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego