Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 20ChIP-seq
  • 13DNase-seq
  • 1ATAC-seq
  • 1RRBS
  • 1total RNA-seq
Assay category
  • 20DNA binding
  • 14DNA accessibility
  • 1DNA methylation
  • 1Transcription
Target of assay
  • 17histone
  • 17histone modification
  • 13broad histone mark
  • 4narrow histone mark
  • 3control
Date released
  • 15October, 2017
  • 12June, 2019
  • 6October, 2019
  • 1February, 2023
  • 1July, 2019
  • 1November, 2018
Available data
  • 27bam
  • 25bigWig
  • 24bed narrowPeak
  • 19bigBed narrowPeak
  • 16bed broadPeak
  • 14tagAlign
  • 13bed bed3+
  • 13bigBed broadPeak
  • 10fastq
  • 1bed bed3
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1tsv
Organism
  • 36Homo sapiens
Biosample type
  • 36tissue
Organ
  • 36brain
Project
  • 36AMP
Genome assembly (visualization)
  • 27hg19
  • 25GRCh38
Lab
  • 36AMP-T2D consortium
Audit category:
  • 4missing controlled_by
files.run_type!
  • paired-ended
BIOSAMPLE
ASSAY

36 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
RRBS
total RNA-seq
tissue
brain2013111
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego