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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
total RNA-seq
51
ChIP-seq
31
ATAC-seq
7
snATAC-seq
6
single cell RNA-seq
4
MeRIP-seq
4
pCHi-C
3
Hi-C
1
RRBS
Assay category
178
Transcription
51
DNA binding
38
DNA accessibility
3
3D chromatin structure
1
DNA methylation
Target of assay
32
histone
32
histone modification
27
narrow histone mark
15
control
6
transcription factor
5
broad histone mark
2
nucleotide modification
1
RNA binding protein
Date released
July, 2018
113
August, 2017
52
October, 2019
36
May, 2021
20
November, 2019
18
February, 2023
6
April, 2018
6
May, 2022
6
September, 2017
5
March, 2019
4
January, 2021
4
March, 2020
4
November, 2020
2
August, 2021
1
August, 2022
1
July, 2019
1
October, 2017
Available data
226
bam
184
bigWig
152
tsv
151
fastq
bed narrowPeak
21
bed bed3+
9
tagAlign
8
bed broadPeak
6
txt
2
bedpe bed3+
2
bigBed narrowPeak
2
hic
1
bed bedMethyl
1
bedpe
1
bigBed bedMethyl
Organism
279
Homo sapiens
Biosample type
279
tissue
Organ
230
pancreas
21
eye
4
gonad
4
ovary
1
brain
1
connective tissue
1
limb
1
lymph node
1
pituitary gland
1
skin of body
Project
255
AMP
24
T1D
Genome assembly (visualization)
169
hg19
164
GRCh38
Lab
239
AMP-T2D consortium
28
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
9
missing controlled_by
files.file_type!
bed narrowPeak
month_released!
July, 2018
organ_slims!
artery
BIOSAMPLE
ASSAY
279 results
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total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
single cell RNA-seq
MeRIP-seq
pCHi-C
Hi-C
RRBS
tissue
islet of Langerhans
172
51
31
7
6
4
4
3
1
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