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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
total RNA-seq
48
ATAC-seq
43
ChIP-seq
7
snATAC-seq
4
MeRIP-seq
4
pCHi-C
3
Hi-C
1
RRBS
Assay category
195
Transcription
55
DNA accessibility
43
DNA binding
3
3D chromatin structure
1
DNA methylation
Target of assay
37
histone
37
histone modification
29
narrow histone mark
8
broad histone mark
8
control
2
nucleotide modification
Date released
118
July, 2018
52
October, 2019
39
November, 2019
36
May, 2021
20
August, 2017
18
February, 2023
6
March, 2020
4
January, 2021
4
March, 2019
4
November, 2020
2
August, 2021
1
August, 2022
1
July, 2019
Available data
342
bam
300
bigWig
268
tsv
fastq
59
bed narrowPeak
21
bed bed3+
9
tagAlign
8
bed broadPeak
6
txt
2
bedpe bed3+
2
bigBed narrowPeak
2
hic
1
bed bedMethyl
1
bedpe
1
bigBed bedMethyl
Organism
305
Homo sapiens
Biosample type
305
tissue
Organ
256
pancreas
21
eye
4
gonad
4
ovary
1
brain
1
connective tissue
1
limb
1
lymph node
1
pituitary gland
1
skin of body
Project
279
AMP
26
T1D
Genome assembly (visualization)
203
hg19
192
GRCh38
Lab
273
AMP-T2D consortium
22
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
audit script error
files.file_type!
fastq
BIOSAMPLE
ASSAY
305 results
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total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
MeRIP-seq
pCHi-C
Hi-C
RRBS
tissue
islet of Langerhans
195
48
43
7
4
4
3
1
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