Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
97
total RNA-seq
16
ChIP-seq
6
single cell RNA-seq
2
ATAC-seq
Assay category
103
Transcription
16
DNA binding
2
DNA accessibility
Target of assay
7
control
6
transcription factor
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
99
August, 2017
6
April, 2018
6
May, 2022
6
September, 2017
2
July, 2018
1
March, 2019
1
October, 2017
Available data
342
bam
300
bigWig
268
tsv
153
fastq
bed narrowPeak
21
bed bed3+
9
tagAlign
8
bed broadPeak
6
txt
2
bedpe bed3+
2
bigBed narrowPeak
2
hic
1
bed bedMethyl
1
bedpe
1
bigBed bedMethyl
Organism
121
Homo sapiens
Biosample type
121
tissue
Organ
121
pancreas
Project
121
AMP
Genome assembly (visualization)
109
GRCh38
109
hg19
Lab
113
AMP-T2D consortium
6
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
9
missing controlled_by
files.file_type!
bed narrowPeak
organ_slims!
artery
BIOSAMPLE
ASSAY
121 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
tissue
islet of Langerhans
97
16
6
2
Download