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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
292
total RNA-seq
68
ATAC-seq
61
ChIP-seq
7
snATAC-seq
6
single cell RNA-seq
4
MeRIP-seq
4
pCHi-C
3
Hi-C
1
FAIRE-seq
1
RRBS
Assay category
298
Transcription
76
DNA accessibility
61
DNA binding
3
3D chromatin structure
1
DNA methylation
Target of assay
44
histone
44
histone modification
34
narrow histone mark
13
control
10
broad histone mark
6
transcription factor
2
nucleotide modification
1
RNA binding protein
Date released
124
August, 2017
120
July, 2018
52
October, 2019
39
November, 2019
36
May, 2021
24
May, 2022
18
February, 2023
6
April, 2018
6
March, 2020
5
March, 2019
4
January, 2021
4
November, 2020
4
September, 2017
2
August, 2021
1
August, 2022
1
July, 2019
1
October, 2017
Available data
331
bam
291
bigWig
268
tsv
142
fastq
50
bed narrowPeak
11
bed bed3+
9
tagAlign
8
bed broadPeak
6
txt
2
bedpe bed3+
2
hic
1
bed bedMethyl
1
bedpe
1
bigBed bedMethyl
1
bigBed narrowPeak
Organism
447
Homo sapiens
Biosample type
447
tissue
Organ
398
pancreas
21
eye
4
gonad
4
ovary
1
brain
1
connective tissue
1
limb
1
lymph node
1
pituitary gland
1
skin of body
Project
421
AMP
26
T1D
Genome assembly (visualization)
333
hg19
303
GRCh38
Lab
389
AMP-T2D consortium
46
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
9
missing controlled_by
files.platform.term_name!
Illumina Genome Analyzer
BIOSAMPLE
ASSAY
447 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
single cell RNA-seq
MeRIP-seq
pCHi-C
Hi-C
FAIRE-seq
RRBS
tissue
islet of Langerhans
292
68
61
7
6
4
4
3
1
1
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