Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
292
total RNA-seq
68
ATAC-seq
43
ChIP-seq
7
snATAC-seq
4
MeRIP-seq
4
pCHi-C
3
Hi-C
1
RRBS
Assay category
292
Transcription
75
DNA accessibility
43
DNA binding
3
3D chromatin structure
1
DNA methylation
Target of assay
37
histone
37
histone modification
29
narrow histone mark
8
broad histone mark
8
control
2
nucleotide modification
Date released
120
July, 2018
109
August, 2017
52
October, 2019
39
November, 2019
36
May, 2021
24
May, 2022
18
February, 2023
6
March, 2020
5
March, 2019
4
January, 2021
4
November, 2020
2
August, 2021
1
August, 2022
1
July, 2019
1
October, 2017
Available data
306
bam
271
bigWig
262
tsv
117
fastq
45
bed narrowPeak
9
tagAlign
8
bed broadPeak
6
txt
2
bedpe bed3+
2
hic
1
bed bedMethyl
1
bedpe
1
bigBed bedMethyl
Organism
422
Homo sapiens
Biosample type
422
tissue
Organ
373
pancreas
21
eye
4
gonad
4
ovary
1
brain
1
connective tissue
1
limb
1
lymph node
1
pituitary gland
1
skin of body
Project
396
AMP
26
T1D
Genome assembly (visualization)
313
hg19
284
GRCh38
Lab
364
AMP-T2D consortium
46
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
files.run_type!
single-ended
BIOSAMPLE
ASSAY
422 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
MeRIP-seq
pCHi-C
Hi-C
RRBS
tissue
islet of Langerhans
292
68
43
7
4
4
3
1
Download