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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
278
total RNA-seq
54
ATAC-seq
37
ChIP-seq
7
snATAC-seq
6
single cell RNA-seq
3
Hi-C
2
MeRIP-seq
1
DNase-seq
1
FAIRE-seq
1
RRBS
Assay category
284
Transcription
63
DNA accessibility
37
DNA binding
3
3D chromatin structure
1
DNA methylation
Target of assay
30
histone
30
histone modification
16
narrow histone mark
control
14
broad histone mark
7
transcription factor
2
RNA binding protein
2
nucleotide modification
Date released
126
August, 2017
120
July, 2018
October, 2019
39
November, 2019
36
May, 2021
24
May, 2022
18
February, 2023
6
April, 2018
6
March, 2020
4
January, 2021
4
March, 2019
2
August, 2021
2
November, 2020
1
August, 2022
1
July, 2019
1
October, 2017
Available data
335
bam
300
bigWig
268
tsv
146
fastq
59
bed narrowPeak
19
bed bed3+
8
bed broadPeak
8
tagAlign
6
txt
2
bedpe bed3+
2
bigBed narrowPeak
2
hic
1
bed bedMethyl
1
bedpe
1
bigBed bedMethyl
Organism
390
Homo sapiens
Biosample type
390
tissue
Organ
390
pancreas
Project
364
AMP
26
T1D
Genome assembly (visualization)
342
hg19
312
GRCh38
Lab
335
AMP-T2D consortium
46
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
2
Rohit N. Kulkarni, M.D., Ph.D.
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
10
missing controlled_by
lab.title!
Maike Sander, UCSD
month_released!
October, 2019
target.investigated_as!
control
BIOSAMPLE
ASSAY
390 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
single cell RNA-seq
Hi-C
MeRIP-seq
DNase-seq
FAIRE-seq
RRBS
tissue
islet of Langerhans
278
54
37
7
6
3
2
1
1
1
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