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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
71
ChIP-seq
68
ATAC-seq
7
snATAC-seq
4
pCHi-C
3
Hi-C
1
DNase-seq
1
FAIRE-seq
1
RRBS
Assay category
77
DNA accessibility
71
DNA binding
3
3D chromatin structure
1
DNA methylation
Target of assay
51
histone
51
histone modification
37
narrow histone mark
14
broad histone mark
13
control
7
transcription factor
2
RNA binding protein
Date released
44
August, 2017
38
October, 2019
20
November, 2019
18
May, 2022
13
February, 2023
6
September, 2017
5
March, 2019
4
January, 2021
4
March, 2020
1
August, 2021
1
August, 2022
1
July, 2019
1
October, 2017
Available data
70
bam
59
bed narrowPeak
50
fastq
34
bigWig
21
bed bed3+
9
tagAlign
8
bed broadPeak
2
bedpe bed3+
2
bigBed narrowPeak
2
hic
1
bed bedMethyl
1
bedpe
1
bigBed bedMethyl
1
tsv
Organism
156
Homo sapiens
Biosample type
156
tissue
Organ
121
pancreas
7
eye
4
gonad
4
ovary
1
brain
1
connective tissue
1
limb
1
lymph node
1
pituitary gland
1
skin of body
Project
137
AMP
19
T1D
Genome assembly (visualization)
78
hg19
48
GRCh38
Lab
114
AMP-T2D consortium
35
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
10
missing controlled_by
replicates.library.nucleic_acid_term_name!
RNA
BIOSAMPLE
ASSAY
156 results
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Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
pCHi-C
Hi-C
DNase-seq
FAIRE-seq
RRBS
tissue
islet of Langerhans
71
68
7
4
3
1
1
1
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