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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 282total RNA-seq
  • 50ATAC-seq
  • 49ChIP-seq
  • 5snATAC-seq
  • 4pCHi-C
  • 1FAIRE-seq
  • 1Hi-C
  • 1RRBS
Assay category
  • 282Transcription
  • 56DNA accessibility
  • 49DNA binding
  • 13D chromatin structure
  • 1DNA methylation
Target of assay
  • 37histone
  • 37histone modification
  • 29narrow histone mark
  • 11control
  • 8broad histone mark
  • 1RNA binding protein
  • 1transcription factor
Date released
  • 118July, 2018
  • 114August, 2017
  • 52October, 2019
  • 39November, 2019
  • 36May, 2021
  • 24May, 2022
  • 4January, 2021
  • 4September, 2017
  • 1August, 2022
  • 1July, 2019
Available data
  • 310bam
  • 268bigWig
  • 258tsv
  • 122fastq
  • 47bed narrowPeak
  • 9tagAlign
  • 6bed broadPeak
  • 6txt
  • 1bed bed3+
  • 1bed bedMethyl
  • 1bedpe bed3+
  • 1bigBed bedMethyl
  • 1bigBed narrowPeak
  • 1hic
Organism
  • 393Homo sapiens
Biosample type
  • 393tissue
Organ
  • 344pancreas
  • 21eye
  • 4gonad
  • 4ovary
  • 1brain
  • 1connective tissue
  • 1limb
  • 1lymph node
  • 1pituitary gland
  • 1skin of body
Project
  • 389AMP
  • 4T1D
Genome assembly (visualization)
  • 307hg19
  • 280GRCh38
Lab
  • 365AMP-T2D consortium
  • 28Kyle Gaulton, UCSD
Audit category:
  • 1audit script error
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

393 results

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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
pCHi-C
FAIRE-seq
Hi-C
RRBS
tissue
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