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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
292
total RNA-seq
71
ChIP-seq
49
ATAC-seq
6
single cell RNA-seq
6
snATAC-seq
4
MeRIP-seq
4
pCHi-C
3
Hi-C
1
DNase-seq
1
FAIRE-seq
Assay category
298
Transcription
71
DNA binding
57
DNA accessibility
3
3D chromatin structure
Target of assay
51
histone
51
histone modification
37
narrow histone mark
15
control
14
broad histone mark
7
transcription factor
2
RNA binding protein
2
nucleotide modification
Date released
133
August, 2017
120
July, 2018
52
October, 2019
36
May, 2021
24
May, 2022
20
November, 2019
18
February, 2023
6
April, 2018
6
March, 2020
6
September, 2017
5
March, 2019
4
November, 2020
3
January, 2021
2
August, 2021
1
August, 2022
1
October, 2017
Available data
323
bam
300
bigWig
268
tsv
153
fastq
40
bed narrowPeak
21
bed bed3+
9
tagAlign
8
bed broadPeak
6
txt
2
bedpe bed3+
2
bigBed narrowPeak
2
hic
1
bedpe
Organism
437
Homo sapiens
Biosample type
437
tissue
Organ
388
pancreas
21
eye
4
gonad
4
ovary
1
brain
1
connective tissue
1
limb
1
lymph node
1
pituitary gland
1
skin of body
Project
412
AMP
25
T1D
Genome assembly (visualization)
324
hg19
295
GRCh38
Lab
380
AMP-T2D consortium
45
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
10
missing controlled_by
replication_type!
isogenic
BIOSAMPLE
ASSAY
437 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
MeRIP-seq
pCHi-C
Hi-C
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
292
71
49
6
6
4
4
3
1
1
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