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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
18
ATAC-seq
10
total RNA-seq
6
single cell RNA-seq
4
MeRIP-seq
2
Hi-C
2
snATAC-seq
1
DNase-seq
Assay category
22
DNA binding
21
DNA accessibility
16
Transcription
2
3D chromatin structure
Target of assay
14
histone
14
histone modification
8
narrow histone mark
6
broad histone mark
6
transcription factor
4
control
2
nucleotide modification
1
RNA binding protein
Date released
19
August, 2017
18
February, 2023
6
April, 2018
6
March, 2020
5
March, 2019
4
November, 2020
2
August, 2021
2
July, 2018
2
September, 2017
1
October, 2017
Available data
32
bam
32
bigWig
31
fastq
20
bed bed3+
12
bed narrowPeak
10
tsv
2
bed broadPeak
1
bedpe
1
bedpe bed3+
1
bigBed narrowPeak
1
hic
Organism
65
Homo sapiens
Biosample type
65
tissue
Organ
65
pancreas
Project
43
AMP
22
T1D
Genome assembly (visualization)
37
hg19
34
GRCh38
Lab
35
AMP-T2D consortium
18
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
10
missing controlled_by
BIOSAMPLE
ASSAY
65 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
MeRIP-seq
Hi-C
snATAC-seq
DNase-seq
tissue
islet of Langerhans
22
18
10
6
4
2
2
1
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