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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
59
single cell RNA-seq
49
total RNA-seq
27
ChIP-seq
13
DNase-seq
6
snATAC-seq
1
FAIRE-seq
1
Hi-C
1
RRBS
Assay category
108
Transcription
95
DNA accessibility
27
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
6
control
1
RNA binding protein
1
transcription factor
Date released
128
August, 2021
47
September, 2023
23
April, 2019
14
May, 2023
13
June, 2019
4
October, 2019
2
July, 2019
1
December, 2019
Available data
98
bed narrowPeak
64
xls
62
txt
41
bam
34
bigWig
32
bigBed narrowPeak
13
bed bed3+
13
bed broadPeak
13
bigBed broadPeak
csv
5
tsv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
232
Homo sapiens
Biosample type
232
tissue
Organ
232
kidney
Project
185
AMP
47
KPMP
Genome assembly (visualization)
108
GRCh38
36
hg19
Lab
142
Katalin Susztak, Upenn
47
KPMP
43
AMP-T2D consortium
files.file_type!
csv
lab.title!
Mark McCarthy, Oxford
BIOSAMPLE
ASSAY
232 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
DNase-seq
snATAC-seq
FAIRE-seq
Hi-C
RRBS
tissue
kidney
75
59
49
27
13
6
1
1
1
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