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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 75ATAC-seq
  • 64single cell RNA-seq
  • 49total RNA-seq
  • 26ChIP-seq
  • 11DNase-seq
  • 6snATAC-seq
  • 1Hi-C
  • 1RRBS
Assay category
  • 113Transcription
  • 92DNA accessibility
  • 26DNA binding
  • 13D chromatin structure
  • 1DNA methylation
Target of assay
  • 20histone
  • 20histone modification
  • 10broad histone mark
  • 10narrow histone mark
  • 6control
Date released
  • 128August, 2021
  • 47September, 2023
  • 22April, 2019
  • 14May, 2023
  • 11June, 2019
  • 5February, 2021
  • 4October, 2019
  • 1December, 2019
  • 1July, 2019
Available data
  • 95bed narrowPeak
  • 64xls
  • 62txt
  • 37bam
  • 31bigWig
  • 29bigBed narrowPeak
  • 11bed bed3+
  • 11bed broadPeak
  • 11bigBed broadPeak
  • 5csv
  • 5tsv
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1hic
Organism
  • 233Homo sapiens
Biosample type
  • 233tissue
Organ
  • 233kidney
Project
  • 186AMP
  • 47KPMP
Genome assembly (visualization)
  • 106GRCh38
  • 33hg19
Lab
  • 142Katalin Susztak, Upenn
  • 47KPMP
  • 44AMP-T2D consortium
Audit category:
  • 5audit script error
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

233 results

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ATAC-seq
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