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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
20
ATAC-seq
20
total RNA-seq
3
WGBS
1
Hi-C
1
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
23
DNA binding
21
Transcription
20
DNA accessibility
4
DNA methylation
1
3D chromatin structure
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
3
control
Date released
40
May, 2022
27
August, 2017
2
March, 2020
1
February, 2021
Available data
bam
252
bigWig
149
tsv
104
bed narrowPeak
71
fastq
70
tagAlign
40
bigBed narrowPeak
5
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
70
Homo sapiens
Biosample type
70
tissue
Organ
70
liver
Project
70
AMP
Genome assembly (visualization)
22
hg19
Lab
40
Karen Mohlke, UNC
30
AMP-T2D consortium
files.file_type!
bam
organ_slims!
large intestine
BIOSAMPLE
ASSAY
70 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
WGBS
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
23
20
20
3
1
1
1
1
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