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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
159
total RNA-seq
121
ChIP-seq
13
ATAC-seq
2
WGBS
1
Hi-C
1
RRBS
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
Assay category
161
Transcription
121
DNA binding
13
DNA accessibility
3
DNA methylation
1
3D chromatin structure
Target of assay
65
histone modification
64
histone
42
narrow histone mark
38
control
22
broad histone mark
18
transcription factor
1
chromatin remodeller
Date released
193
May, 2020
51
August, 2017
26
May, 2022
16
December, 2017
6
October, 2019
3
March, 2020
2
July, 2019
2
November, 2018
1
February, 2021
Available data
247
bam
225
bigWig
148
tsv
78
bed narrowPeak
70
tagAlign
46
fastq
21
bigBed narrowPeak
5
bed bed3+
bed broadPeak
2
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
300
Homo sapiens
Biosample type
300
tissue
Organ
300
liver
Project
300
AMP
Genome assembly (visualization)
226
hg19
203
GRCh38
Lab
274
AMP-T2D consortium
26
Karen Mohlke, UNC
Audit category:
12
inconsistent control
Audit category:
1
inconsistent control read length
files.file_type!
bed broadPeak
organ_slims!
skeleton
replicates.library.biosample.life_stage!
child
BIOSAMPLE
ASSAY
300 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
Hi-C
RRBS
pCHi-C
single cell RNA-seq
small RNA-seq
tissue
liver
159
121
13
2
1
1
1
1
1
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