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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
165
total RNA-seq
145
ChIP-seq
20
ATAC-seq
3
WGBS
1
Hi-C
1
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
166
Transcription
145
DNA binding
20
DNA accessibility
4
DNA methylation
1
3D chromatin structure
Target of assay
65
histone modification
64
histone
43
control
42
narrow histone mark
37
transcription factor
22
broad histone mark
2
chromatin remodeller
1
RNA binding protein
Date released
193
May, 2020
52
August, 2017
40
May, 2022
38
December, 2017
6
October, 2019
4
November, 2018
July, 2019
3
March, 2020
1
February, 2021
Available data
269
bam
249
bigWig
146
tsv
104
bed narrowPeak
71
fastq
70
tagAlign
40
bigBed narrowPeak
5
bed bed3+
2
bed broadPeak
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
337
Homo sapiens
Biosample type
337
tissue
Organ
337
liver
Project
337
AMP
Genome assembly (visualization)
250
hg19
220
GRCh38
Lab
297
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
files.file_type!
bigBed broadPeak
month_released!
July, 2019
organ_slims!
esophagus
BIOSAMPLE
ASSAY
337 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
165
145
20
3
1
1
1
1
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