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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
147
total RNA-seq
122
ChIP-seq
2
DNase-seq
1
small RNA-seq
Assay category
148
Transcription
122
DNA binding
2
DNA accessibility
Target of assay
45
histone modification
44
histone
40
control
37
transcription factor
34
narrow histone mark
10
broad histone mark
2
chromatin remodeller
1
RNA binding protein
Date released
193
May, 2020
38
December, 2017
25
August, 2017
6
November, 2018
6
October, 2019
3
July, 2019
1
March, 2020
Available data
272
bam
252
bigWig
149
tsv
104
bed narrowPeak
71
fastq
70
tagAlign
40
bigBed narrowPeak
5
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
0
bed bed3
Organism
272
Homo sapiens
Biosample type
272
tissue
Organ
272
liver
Project
272
AMP
Genome assembly (visualization)
233
hg19
225
GRCh38
Lab
272
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
272 results
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total RNA-seq
ChIP-seq
DNase-seq
small RNA-seq
tissue
liver
147
122
2
1
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