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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
167
total RNA-seq
144
ChIP-seq
20
ATAC-seq
2
WGBS
1
DNase-seq
1
Hi-C
1
RRBS
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
Assay category
169
Transcription
144
DNA binding
21
DNA accessibility
3
DNA methylation
1
3D chromatin structure
Target of assay
64
histone modification
63
histone
43
control
41
narrow histone mark
37
transcription factor
22
broad histone mark
2
chromatin remodeller
1
RNA binding protein
Date released
193
May, 2020
50
August, 2017
40
May, 2022
38
December, 2017
6
October, 2019
5
November, 2018
3
July, 2019
3
March, 2020
1
February, 2021
Available data
270
bam
250
bigWig
149
tsv
102
bed narrowPeak
70
tagAlign
68
fastq
38
bigBed narrowPeak
4
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bedpe bed3+
1
bigBed bedMethyl
1
bigBed broadPeak
1
csv
1
hic
Organism
339
Homo sapiens
Biosample type
339
tissue
Organ
339
liver
Project
339
AMP
Genome assembly (visualization)
253
hg19
223
GRCh38
Lab
299
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
files.platform.term_name!
Illumina HiSeq 2500
BIOSAMPLE
ASSAY
339 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
small RNA-seq
tissue
liver
167
144
20
2
1
1
1
1
1
1
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