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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
167
total RNA-seq
99
ChIP-seq
20
ATAC-seq
3
WGBS
2
DNase-seq
1
Hi-C
1
RRBS
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
Assay category
169
Transcription
99
DNA binding
22
DNA accessibility
4
DNA methylation
1
3D chromatin structure
Target of assay
61
histone modification
60
histone
42
narrow histone mark
33
control
18
broad histone mark
5
transcription factor
1
RNA binding protein
Date released
193
May, 2020
45
August, 2017
40
May, 2022
6
October, 2019
3
December, 2017
3
July, 2019
3
March, 2020
2
November, 2018
1
February, 2021
Available data
226
bam
216
bigWig
149
tsv
70
tagAlign
68
bed narrowPeak
25
fastq
5
bed bed3+
5
bigBed narrowPeak
2
bed broadPeak
2
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
296
Homo sapiens
Biosample type
296
tissue
Organ
296
liver
Project
296
AMP
Genome assembly (visualization)
219
hg19
189
GRCh38
Lab
256
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
1
inconsistent control read length
files.read_length!
50
BIOSAMPLE
ASSAY
296 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
small RNA-seq
tissue
liver
167
99
20
3
2
1
1
1
1
1
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