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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
167
total RNA-seq
132
ChIP-seq
20
ATAC-seq
3
WGBS
1
Hi-C
1
RRBS
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
Assay category
169
Transcription
132
DNA binding
20
DNA accessibility
4
DNA methylation
1
3D chromatin structure
Target of assay
57
histone
57
histone modification
39
control
38
narrow histone mark
36
transcription factor
19
broad histone mark
2
chromatin remodeller
1
RNA binding protein
Date released
193
May, 2020
40
May, 2022
39
August, 2017
38
December, 2017
6
October, 2019
4
November, 2018
3
July, 2019
3
March, 2020
1
February, 2021
Available data
257
bam
241
bigWig
149
tsv
93
bed narrowPeak
70
tagAlign
56
fastq
38
bigBed narrowPeak
3
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
327
Homo sapiens
Biosample type
327
tissue
Organ
327
liver
Project
327
AMP
Genome assembly (visualization)
244
hg19
214
GRCh38
Lab
287
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
files.run_type!
paired-ended
organ_slims!
epithelium
BIOSAMPLE
ASSAY
327 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
Hi-C
RRBS
pCHi-C
single cell RNA-seq
small RNA-seq
tissue
liver
167
132
20
3
1
1
1
1
1
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