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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 167total RNA-seq
  • 132ChIP-seq
  • 20ATAC-seq
  • 3WGBS
  • 1Hi-C
  • 1RRBS
  • 1pCHi-C
  • 1single cell RNA-seq
  • 1small RNA-seq
Assay category
  • 169Transcription
  • 132DNA binding
  • 20DNA accessibility
  • 4DNA methylation
  • 13D chromatin structure
Target of assay
  • 57histone
  • 57histone modification
  • 39control
  • 38narrow histone mark
  • 36transcription factor
  • 19broad histone mark
  • 2chromatin remodeller
  • 1RNA binding protein
Date released
  • 193May, 2020
  • 40May, 2022
  • 39August, 2017
  • 38December, 2017
  • 6October, 2019
  • 4November, 2018
  • 3July, 2019
  • 3March, 2020
  • 1February, 2021
Available data
  • 257bam
  • 241bigWig
  • 149tsv
  • 93bed narrowPeak
  • 70tagAlign
  • 56fastq
  • 38bigBed narrowPeak
  • 3bed bed3+
  • 1bed bedMethyl
  • 1bedpe bed3+
  • 1bigBed bedMethyl
  • 1csv
  • 1hic
Organism
  • 327Homo sapiens
Biosample type
  • 327tissue
Organ
  • 327liver
Project
  • 327AMP
Genome assembly (visualization)
  • 244hg19
  • 214GRCh38
Lab
  • 287AMP-T2D consortium
  • 40Karen Mohlke, UNC
Audit category:
  • 27inconsistent control
Audit category:
  • 1inconsistent control read length
files.run_type!
  • paired-ended
BIOSAMPLE
ASSAY

327 results

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total RNA-seq
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ATAC-seq
WGBS
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single cell RNA-seq
small RNA-seq
tissue
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