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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 165total RNA-seq
  • 139ChIP-seq
  • 20ATAC-seq
  • 3WGBS
  • 1DNase-seq
  • 1Hi-C
  • 1RRBS
  • 1small RNA-seq
Assay category
  • 166Transcription
  • 139DNA binding
  • 21DNA accessibility
  • 4DNA methylation
  • 13D chromatin structure
Target of assay
  • 65histone modification
  • 64histone
  • 42narrow histone mark
  • 41control
  • 33transcription factor
  • 22broad histone mark
  • 2chromatin remodeller
Date released
  • 193May, 2020
  • 49August, 2017
  • 40May, 2022
  • 35December, 2017
  • 6October, 2019
  • 5November, 2018
  • 2March, 2020
  • 1July, 2019
Available data
  • 263bam
  • 245bigWig
  • 146tsv
  • 99bed narrowPeak
  • 70tagAlign
  • 64fastq
  • 37bigBed narrowPeak
  • 1bed bed3+
  • 1bed bedMethyl
  • 1bed broadPeak
  • 1bedpe bed3+
  • 1bigBed bedMethyl
  • 1bigBed broadPeak
  • 1hic
Organism
  • 331Homo sapiens
Biosample type
  • 331tissue
Organ
  • 331liver
Project
  • 331AMP
Genome assembly (visualization)
  • 247hg19
  • 217GRCh38
Lab
  • 291AMP-T2D consortium
  • 40Karen Mohlke, UNC
Audit category:
  • 27inconsistent control
Audit category:
  • 1inconsistent control read length
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

331 results

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total RNA-seq
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ATAC-seq
WGBS
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small RNA-seq
tissue
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