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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 166total RNA-seq
  • 109ChIP-seq
  • 20ATAC-seq
  • 3WGBS
  • 2DNase-seq
  • 1Hi-C
  • 1pCHi-C
  • 1single cell RNA-seq
  • 1small RNA-seq
Assay category
  • 168Transcription
  • 109DNA binding
  • 22DNA accessibility
  • 3DNA methylation
  • 13D chromatin structure
Target of assay
  • 60histone modification
  • 59histone
  • 43control
  • 40narrow histone mark
  • 19broad histone mark
  • 6transcription factor
  • 1RNA binding protein
Date released
  • 193May, 2020
  • 51August, 2017
  • 40May, 2022
  • 11December, 2017
  • 3July, 2019
  • 3March, 2020
  • 2November, 2018
  • 1February, 2021
Available data
  • 235bam
  • 215bigWig
  • 148tsv
  • 70tagAlign
  • 68bed narrowPeak
  • 39fastq
  • 9bigBed narrowPeak
  • 5bed bed3+
  • 2bed broadPeak
  • 2bigBed broadPeak
  • 1bedpe bed3+
  • 1csv
  • 1hic
Organism
  • 304Homo sapiens
Biosample type
  • 304tissue
Organ
  • 304liver
Project
  • 304AMP
Genome assembly (visualization)
  • 217hg19
  • 188GRCh38
Lab
  • 264AMP-T2D consortium
  • 40Karen Mohlke, UNC
Audit category:
  • 1inconsistent control read length
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

304 results

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total RNA-seq
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ATAC-seq
WGBS
DNase-seq
Hi-C
pCHi-C
single cell RNA-seq
small RNA-seq
tissue
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