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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
4
snATAC-seq
2
DNase-seq
2
total RNA-seq
1
FAIRE-seq
1
Hi-C
1
pCHi-C
Assay category
16
DNA binding
7
DNA accessibility
2
Transcription
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
8
broad histone mark
4
narrow histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
14
August, 2017
4
January, 2021
3
March, 2020
2
June, 2019
2
October, 2018
1
May, 2021
1
November, 2018
Available data
22
bam
19
bigWig
19
fastq
16
bed narrowPeak
16
bigBed narrowPeak
8
bed broadPeak
7
tagAlign
bed bedMethyl
3
bigBed bedMethyl
2
bed bed3+
2
bigBed broadPeak
2
tsv
1
bedpe bed3+
1
hic
Organism
20
Homo sapiens
Biosample type
27
tissue
Organ
27
pancreas
Project
23
AMP
4
T1D
Genome assembly (visualization)
18
hg19
16
GRCh38
Lab
22
AMP-T2D consortium
5
Kyle Gaulton, UCSD
Audit category:
4
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
27 results
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ChIP-seq
snATAC-seq
DNase-seq
total RNA-seq
FAIRE-seq
Hi-C
pCHi-C
tissue
pancreas
16
4
2
2
1
1
1
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