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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
4
snATAC-seq
2
DNase-seq
2
WGBS
2
total RNA-seq
1
Hi-C
1
RRBS
1
pCHi-C
Assay category
12
DNA binding
6
DNA accessibility
3
DNA methylation
2
Transcription
1
3D chromatin structure
Target of assay
8
histone
8
histone modification
5
broad histone mark
3
control
3
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
10
August, 2017
4
January, 2021
3
March, 2020
2
June, 2019
2
November, 2018
2
October, 2018
1
July, 2019
1
May, 2021
Available data
17
bam
14
bigWig
14
fastq
11
bed narrowPeak
11
bigBed narrowPeak
8
bed broadPeak
7
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
2
bed bed3+
2
bigBed broadPeak
2
tsv
1
bedpe bed3+
1
hic
Organism
18
Homo sapiens
Biosample type
25
tissue
Organ
25
pancreas
Project
21
AMP
4
T1D
Genome assembly (visualization)
14
GRCh38
14
hg19
Lab
20
AMP-T2D consortium
5
Kyle Gaulton, UCSD
Audit category:
1
inconsistent assembly
files.read_length!
50
BIOSAMPLE
ASSAY
25 results
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ChIP-seq
snATAC-seq
DNase-seq
WGBS
total RNA-seq
Hi-C
RRBS
pCHi-C
tissue
pancreas
12
4
2
2
2
1
1
1
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