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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 15ChIP-seq
  • 4snATAC-seq
  • 2DNase-seq
  • 2WGBS
  • 1RRBS
  • 1total RNA-seq
Assay category
  • 15DNA binding
  • 6DNA accessibility
  • 3DNA methylation
  • 1Transcription
Target of assay
  • 12histone
  • 12histone modification
  • 8broad histone mark
  • 4narrow histone mark
  • 3control
Date released
  • 14August, 2017
  • 4January, 2021
  • 2June, 2019
  • 2November, 2018
  • 1July, 2019
  • 1May, 2021
  • 1October, 2018
Available data
  • 19bam
  • 17fastq
  • 16bigWig
  • 14bed narrowPeak
  • 14bigBed narrowPeak
  • 8bed broadPeak
  • 7tagAlign
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 2bed bed3+
  • 2bigBed broadPeak
Organism
  • 18Homo sapiens
Biosample type
  • 25tissue
Organ
  • 25pancreas
Project
  • 21AMP
  • 4T1D
Genome assembly (visualization)
  • 16GRCh38
  • 15hg19
Lab
  • 20AMP-T2D consortium
  • 5Kyle Gaulton, UCSD
Audit category:
  • 4inconsistent control read length
  • 1inconsistent assembly
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

25 results

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ChIP-seq
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DNase-seq
WGBS
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tissue
pancreas1542211
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