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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
single cell RNA-seq
8
ChIP-seq
4
ATAC-seq
4
total RNA-seq
1
Hi-C
Assay category
16
Transcription
8
DNA binding
4
DNA accessibility
1
3D chromatin structure
Target of assay
8
histone
8
histone modification
4
broad histone mark
4
narrow histone mark
Date released
10
September, 2018
6
April, 2018
5
July, 2018
4
May, 2022
2
October, 2018
1
August, 2018
1
October, 2022
Available data
29
bam
29
bigWig
26
fastq
16
tsv
13
bed narrowPeak
bigBed narrowPeak
4
zippedFastqFolder
1
bedpe bed3+
1
cool
1
hic
Organism
29
Homo sapiens
Biosample type
29
primary cell
Organ
29
epithelium
29
pancreas
Project
24
AMP
5
HPAP
Genome assembly (visualization)
25
hg19
24
GRCh38
Lab
24
AMP-T2D consortium
5
Klaus Kaestner, Upenn
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
8
missing controlled_by
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
29 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
primary cell
pancreatic acinar cell
12
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4
4
1
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