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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
ChIP-seq
8
single cell RNA-seq
7
ATAC-seq
4
total RNA-seq
1
Hi-C
Assay category
12
Transcription
8
DNA binding
7
DNA accessibility
1
3D chromatin structure
Target of assay
8
histone
8
histone modification
4
broad histone mark
4
narrow histone mark
Date released
13
September, 2018
5
July, 2018
4
May, 2022
3
April, 2018
2
October, 2018
1
October, 2022
Available data
23
bam
23
bigWig
20
fastq
12
tsv
11
bed narrowPeak
4
zippedFastqFolder
3
bigBed narrowPeak
1
bedpe bed3+
1
cool
1
hic
Organism
28
Homo sapiens
Biosample type
28
primary cell
Organ
28
epithelium
28
pancreas
Project
23
AMP
5
HPAP
Genome assembly (visualization)
24
hg19
23
GRCh38
Lab
23
AMP-T2D consortium
5
Klaus Kaestner, Upenn
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
8
missing controlled_by
files.platform.term_name!
Illumina NextSeq 500
BIOSAMPLE
ASSAY
28 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
Hi-C
primary cell
pancreatic acinar cell
8
8
7
4
1
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