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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
ATAC-seq
8
ChIP-seq
8
single cell RNA-seq
4
total RNA-seq
1
Hi-C
Assay category
12
Transcription
9
DNA accessibility
8
DNA binding
1
3D chromatin structure
Target of assay
8
histone
8
histone modification
4
broad histone mark
4
narrow histone mark
Date released
13
September, 2018
6
April, 2018
4
May, 2022
2
October, 2018
1
August, 2017
1
August, 2018
1
July, 2018
1
October, 2022
1
September, 2017
Available data
25
bam
25
bigWig
22
fastq
13
bed narrowPeak
12
tsv
5
bigBed narrowPeak
4
zippedFastqFolder
1
bedpe bed3+
1
cool
1
hic
Organism
30
Homo sapiens
Biosample type
30
primary cell
Organ
30
epithelium
30
pancreas
Project
25
AMP
5
HPAP
Genome assembly (visualization)
26
hg19
25
GRCh38
Lab
25
AMP-T2D consortium
5
Klaus Kaestner, Upenn
Audit category:
1
audit script error
Audit category:
8
missing controlled_by
files.read_length!
43
BIOSAMPLE
ASSAY
30 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
Hi-C
primary cell
pancreatic acinar cell
9
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8
4
1
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