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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
single cell RNA-seq
9
ATAC-seq
8
ChIP-seq
2
total RNA-seq
1
Hi-C
Assay category
14
Transcription
9
DNA accessibility
8
DNA binding
1
3D chromatin structure
Target of assay
8
histone
8
histone modification
4
broad histone mark
4
narrow histone mark
Date released
13
September, 2018
6
April, 2018
5
July, 2018
4
May, 2022
October, 2018
1
August, 2017
1
August, 2018
1
October, 2022
1
September, 2017
Available data
27
bam
27
bigWig
24
fastq
14
tsv
13
bed narrowPeak
5
bigBed narrowPeak
4
zippedFastqFolder
1
bedpe bed3+
1
cool
1
hic
Organism
32
Homo sapiens
Biosample type
32
primary cell
Organ
32
epithelium
32
pancreas
Project
27
AMP
5
HPAP
Genome assembly (visualization)
28
hg19
27
GRCh38
Lab
27
AMP-T2D consortium
5
Klaus Kaestner, Upenn
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
8
missing controlled_by
month_released!
October, 2018
BIOSAMPLE
ASSAY
32 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
total RNA-seq
Hi-C
primary cell
pancreatic acinar cell
12
9
8
2
1
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