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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
single cell RNA-seq
9
ATAC-seq
4
ChIP-seq
4
total RNA-seq
1
Hi-C
Assay category
16
Transcription
9
DNA accessibility
4
DNA binding
1
3D chromatin structure
Target of assay
8
histone
8
histone modification
broad histone mark
4
narrow histone mark
Date released
9
September, 2018
6
April, 2018
5
July, 2018
4
May, 2022
2
October, 2018
1
August, 2017
1
August, 2018
1
October, 2022
1
September, 2017
Available data
25
bam
25
bigWig
22
fastq
16
tsv
9
bed narrowPeak
5
bigBed narrowPeak
4
zippedFastqFolder
1
bedpe bed3+
1
cool
1
hic
Organism
30
Homo sapiens
Biosample type
30
primary cell
Organ
30
epithelium
30
pancreas
Project
25
AMP
5
HPAP
Genome assembly (visualization)
26
hg19
25
GRCh38
Lab
25
AMP-T2D consortium
5
Klaus Kaestner, Upenn
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
4
missing controlled_by
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
30 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
total RNA-seq
Hi-C
primary cell
pancreatic acinar cell
12
9
4
4
1
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