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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
total RNA-seq
35
ATAC-seq
31
WGBS
13
ChIP-seq
9
single cell RNA-seq
1
Hi-C
Assay category
61
Transcription
35
DNA accessibility
31
DNA methylation
13
DNA binding
1
3D chromatin structure
Target of assay
7
histone
7
histone modification
6
control
4
narrow histone mark
3
broad histone mark
Date released
47
May, 2022
27
February, 2023
17
September, 2020
14
August, 2017
13
September, 2018
7
July, 2018
6
February, 2021
5
August, 2020
April, 2018
2
August, 2018
2
September, 2017
1
October, 2022
Available data
93
fastq
47
zippedFastqFolder
39
bigWig
38
bam
25
tsv
13
bed narrowPeak
6
bigBed narrowPeak
1
bedpe bed3+
1
cool
1
hic
Organism
141
Homo sapiens
Biosample type
141
primary cell
Organ
141
epithelium
141
pancreas
Project
103
HPAP
38
AMP
Genome assembly (visualization)
39
GRCh38
33
hg19
Lab
103
Klaus Kaestner, Upenn
38
AMP-T2D consortium
Audit category:
1
audit script error
Audit category:
2
inconsistent control read length
biosample_type!
stem cell
month_released!
April, 2018
BIOSAMPLE
ASSAY
141 results
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total RNA-seq
ATAC-seq
WGBS
ChIP-seq
single cell RNA-seq
Hi-C
primary cell
pancreatic alpha cell
52
35
31
13
9
1
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