Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 42total RNA-seq
  • 31WGBS
  • 22ATAC-seq
  • 6ChIP-seq
  • 1Hi-C
Assay category
  • 42Transcription
  • 31DNA methylation
  • 22DNA accessibility
  • 6DNA binding
  • 13D chromatin structure
Target of assay
  • 6control
Date released
  • 47May, 2022
  • 27February, 2023
  • 15September, 2020
  • 6August, 2017
  • 6February, 2021
  • 1October, 2022
Available data
  • 96fastq
  • 47zippedFastqFolder
  • bigWig
  • 41bam
  • 28tsv
  • 13bed narrowPeak
  • 6bigBed narrowPeak
  • 1bedpe bed3+
  • 1cool
  • 1hic
Organism
  • 102Homo sapiens
Biosample type
  • 102primary cell
Organ
  • 102epithelium
  • 102pancreas
Project
  • 96HPAP
  • 6AMP
Genome assembly (visualization)
  • 1hg19
Lab
  • 96Klaus Kaestner, Upenn
  • 6AMP-T2D consortium
Audit category:
  • 1audit script error
files.file_type!
  • bigWig
BIOSAMPLE
ASSAY

102 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
WGBS
ATAC-seq
ChIP-seq
Hi-C
primary cell
pancreatic alpha cell42312261
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego