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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 52total RNA-seq
  • 13ATAC-seq
  • 13ChIP-seq
  • 12single cell RNA-seq
  • 6WGBS
  • 1Hi-C
Assay category
  • 64Transcription
  • 13DNA accessibility
  • 13DNA binding
  • 6DNA methylation
  • 13D chromatin structure
Target of assay
  • 7histone
  • 7histone modification
  • 6control
  • 4narrow histone mark
  • 3broad histone mark
Date released
  • 27February, 2023
  • 17September, 2020
  • 14August, 2017
  • 13September, 2018
  • 7July, 2018
  • 6February, 2021
  • 5August, 2020
  • 3April, 2018
  • 2August, 2018
  • 2September, 2017
  • 1October, 2022
Available data
  • 96fastq
  • zippedFastqFolder
  • 42bigWig
  • 41bam
  • 28tsv
  • 13bed narrowPeak
  • 6bigBed narrowPeak
  • 1bedpe bed3+
  • 1cool
  • 1hic
Organism
  • 97Homo sapiens
Biosample type
  • 97primary cell
Organ
  • 97epithelium
  • 97pancreas
Project
  • 56HPAP
  • 41AMP
Genome assembly (visualization)
  • 42GRCh38
  • 36hg19
Lab
  • 56Klaus Kaestner, Upenn
  • 41AMP-T2D consortium
Audit category:
  • 1audit script error
Audit category:
  • 2inconsistent control read length
files.file_type!
  • zippedFastqFolder
BIOSAMPLE
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97 results

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total RNA-seq
ATAC-seq
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pancreatic alpha cell5213131261
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