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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
total RNA-seq
35
ATAC-seq
31
WGBS
13
ChIP-seq
12
single cell RNA-seq
1
Hi-C
Assay category
64
Transcription
35
DNA accessibility
31
DNA methylation
13
DNA binding
1
3D chromatin structure
Target of assay
7
histone
7
histone modification
6
control
4
narrow histone mark
3
broad histone mark
Date released
47
May, 2022
27
February, 2023
17
September, 2020
14
August, 2017
13
September, 2018
7
July, 2018
6
February, 2021
5
August, 2020
3
April, 2018
2
August, 2018
2
September, 2017
1
October, 2022
Available data
96
fastq
47
zippedFastqFolder
42
bigWig
41
bam
28
tsv
13
bed narrowPeak
6
bigBed narrowPeak
1
bedpe bed3+
1
cool
1
hic
Organism
144
Homo sapiens
Biosample type
144
primary cell
Organ
144
epithelium
144
pancreas
Project
103
HPAP
41
AMP
Genome assembly (visualization)
42
GRCh38
36
hg19
Lab
103
Klaus Kaestner, Upenn
41
AMP-T2D consortium
Audit category:
1
audit script error
Audit category:
2
inconsistent control read length
files.platform.term_name!
Applied Biosystems SOLiD System 3 Plus
BIOSAMPLE
ASSAY
144 results
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total RNA-seq
ATAC-seq
WGBS
ChIP-seq
single cell RNA-seq
Hi-C
primary cell
pancreatic alpha cell
52
35
31
13
12
1
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