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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
total RNA-seq
31
WGBS
19
ATAC-seq
13
ChIP-seq
12
single cell RNA-seq
1
Hi-C
Assay category
64
Transcription
31
DNA methylation
19
DNA accessibility
13
DNA binding
1
3D chromatin structure
Target of assay
7
histone
7
histone modification
6
control
4
narrow histone mark
3
broad histone mark
Date released
31
May, 2022
27
February, 2023
17
September, 2020
14
August, 2017
13
September, 2018
7
July, 2018
6
February, 2021
5
August, 2020
3
April, 2018
2
August, 2018
2
September, 2017
1
October, 2022
Available data
96
fastq
42
bigWig
41
bam
31
zippedFastqFolder
28
tsv
13
bed narrowPeak
6
bigBed narrowPeak
1
bedpe bed3+
1
cool
1
hic
Organism
128
Homo sapiens
Biosample type
128
primary cell
Organ
128
epithelium
128
pancreas
Project
87
HPAP
41
AMP
Genome assembly (visualization)
42
GRCh38
36
hg19
Lab
87
Klaus Kaestner, Upenn
41
AMP-T2D consortium
Audit category:
1
audit script error
Audit category:
2
inconsistent control read length
files.platform.term_name!
HiSeq HighOutput V4
BIOSAMPLE
ASSAY
128 results
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total RNA-seq
WGBS
ATAC-seq
ChIP-seq
single cell RNA-seq
Hi-C
primary cell
pancreatic alpha cell
52
31
19
13
12
1
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