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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
total RNA-seq
35
ATAC-seq
31
WGBS
13
ChIP-seq
11
single cell RNA-seq
1
Hi-C
Assay category
48
Transcription
35
DNA accessibility
31
DNA methylation
13
DNA binding
1
3D chromatin structure
Target of assay
7
histone
7
histone modification
6
control
4
narrow histone mark
3
broad histone mark
Date released
47
May, 2022
27
February, 2023
14
August, 2017
13
September, 2018
6
February, 2021
6
July, 2018
5
August, 2020
3
April, 2018
2
August, 2018
2
September, 2017
2
September, 2020
1
October, 2022
Available data
80
fastq
47
zippedFastqFolder
41
bigWig
40
bam
27
tsv
13
bed narrowPeak
6
bigBed narrowPeak
1
bedpe bed3+
1
cool
1
hic
Organism
128
Homo sapiens
Biosample type
128
primary cell
Organ
128
epithelium
128
pancreas
Project
88
HPAP
40
AMP
Genome assembly (visualization)
41
GRCh38
35
hg19
Lab
88
Klaus Kaestner, Upenn
40
AMP-T2D consortium
Audit category:
1
audit script error
Audit category:
2
inconsistent control read length
files.platform.term_name!
Illumina HiSeq 4000
BIOSAMPLE
ASSAY
128 results
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total RNA-seq
ATAC-seq
WGBS
ChIP-seq
single cell RNA-seq
Hi-C
primary cell
pancreatic alpha cell
37
35
31
13
11
1
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