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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ATAC-seq
25
total RNA-seq
13
ChIP-seq
12
single cell RNA-seq
1
Hi-C
Assay category
37
Transcription
29
DNA accessibility
13
DNA binding
1
3D chromatin structure
Target of assay
7
histone
7
histone modification
6
control
4
narrow histone mark
3
broad histone mark
Date released
17
September, 2020
16
May, 2022
14
August, 2017
13
September, 2018
7
July, 2018
5
August, 2020
3
April, 2018
2
August, 2018
2
September, 2017
1
October, 2022
Available data
63
fastq
42
bigWig
41
bam
22
tsv
16
zippedFastqFolder
13
bed narrowPeak
6
bigBed narrowPeak
1
bedpe bed3+
1
cool
1
hic
Organism
80
Homo sapiens
Biosample type
80
primary cell
Organ
80
epithelium
80
pancreas
Project
41
AMP
39
HPAP
Genome assembly (visualization)
42
GRCh38
36
hg19
Lab
41
AMP-T2D consortium
39
Klaus Kaestner, Upenn
Audit category:
1
audit script error
Audit category:
2
inconsistent control read length
files.platform.term_name!
Illumina NovaSeq 6000
BIOSAMPLE
ASSAY
80 results
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ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
Hi-C
primary cell
pancreatic alpha cell
29
25
13
12
1
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