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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
total RNA-seq
35
ATAC-seq
31
WGBS
13
ChIP-seq
8
single cell RNA-seq
1
Hi-C
Assay category
45
Transcription
35
DNA accessibility
31
DNA methylation
13
DNA binding
1
3D chromatin structure
Target of assay
7
histone
7
histone modification
6
control
4
narrow histone mark
3
broad histone mark
Date released
47
May, 2022
27
February, 2023
14
August, 2017
13
September, 2018
6
February, 2021
5
August, 2020
5
July, 2018
2
August, 2018
2
September, 2017
2
September, 2020
1
April, 2018
1
October, 2022
Available data
71
fastq
38
bigWig
37
bam
24
tsv
22
zippedFastqFolder
13
bed narrowPeak
6
bigBed narrowPeak
1
bedpe bed3+
1
cool
1
hic
Organism
125
Homo sapiens
Biosample type
125
primary cell
Organ
125
pancreas
94
epithelium
Project
88
HPAP
37
AMP
Genome assembly (visualization)
38
GRCh38
32
hg19
Lab
88
Klaus Kaestner, Upenn
37
AMP-T2D consortium
Audit category:
1
audit script error
Audit category:
2
inconsistent control read length
files.read_length!
100
BIOSAMPLE
ASSAY
125 results
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total RNA-seq
ATAC-seq
WGBS
ChIP-seq
single cell RNA-seq
Hi-C
primary cell
pancreatic alpha cell
37
35
31
13
8
1
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