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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 37total RNA-seq
  • 35ATAC-seq
  • 25WGBS
  • 13ChIP-seq
  • 8single cell RNA-seq
  • 1Hi-C
Assay category
  • 45Transcription
  • 35DNA accessibility
  • 25DNA methylation
  • 13DNA binding
  • 13D chromatin structure
Target of assay
  • 7histone
  • 7histone modification
  • 6control
  • 4narrow histone mark
  • 3broad histone mark
Date released
  • 47May, 2022
  • 27February, 2023
  • 14August, 2017
  • 13September, 2018
  • 5August, 2020
  • 5July, 2018
  • 2August, 2018
  • 2September, 2017
  • 2September, 2020
  • 1April, 2018
  • 1October, 2022
Available data
  • 71fastq
  • 47zippedFastqFolder
  • 38bigWig
  • 37bam
  • 18tsv
  • 13bed narrowPeak
  • 6bigBed narrowPeak
  • 1bedpe bed3+
  • 1cool
  • 1hic
Organism
  • 119Homo sapiens
Biosample type
  • 119primary cell
Organ
  • 119epithelium
  • 119pancreas
Project
  • 82HPAP
  • 37AMP
Genome assembly (visualization)
  • 38GRCh38
  • 32hg19
Lab
  • 82Klaus Kaestner, Upenn
  • 37AMP-T2D consortium
Audit category:
  • 1audit script error
Audit category:
  • 2inconsistent control read length
files.read_length!
  • 100
BIOSAMPLE
ASSAY

119 results

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total RNA-seq
ATAC-seq
WGBS
ChIP-seq
single cell RNA-seq
Hi-C
primary cell
pancreatic alpha cell3735251381
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