Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
15
total RNA-seq
13
ChIP-seq
12
single cell RNA-seq
6
WGBS
1
Hi-C
Assay category
35
DNA accessibility
27
Transcription
13
DNA binding
6
DNA methylation
1
3D chromatin structure
Target of assay
7
histone
7
histone modification
6
control
4
narrow histone mark
3
broad histone mark
Date released
22
May, 2022
17
September, 2020
14
August, 2017
7
July, 2018
6
February, 2021
5
August, 2020
3
April, 2018
3
September, 2018
2
August, 2018
2
September, 2017
1
October, 2022
Available data
59
fastq
32
bigWig
31
bam
22
zippedFastqFolder
18
tsv
13
bed narrowPeak
6
bigBed narrowPeak
1
bedpe bed3+
1
cool
1
hic
Organism
82
Homo sapiens
Biosample type
82
primary cell
Organ
82
epithelium
82
pancreas
Project
51
HPAP
31
AMP
Genome assembly (visualization)
32
GRCh38
26
hg19
Lab
51
Klaus Kaestner, Upenn
31
AMP-T2D consortium
Audit category:
1
audit script error
Audit category:
2
inconsistent control read length
files.read_length!
101
BIOSAMPLE
ASSAY
82 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
WGBS
Hi-C
primary cell
pancreatic alpha cell
35
15
13
12
6
1
Download