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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
total RNA-seq
31
WGBS
13
ChIP-seq
12
single cell RNA-seq
10
ATAC-seq
1
Hi-C
Assay category
64
Transcription
31
DNA methylation
13
DNA binding
10
DNA accessibility
1
3D chromatin structure
Target of assay
7
histone
7
histone modification
6
control
4
narrow histone mark
3
broad histone mark
Date released
27
February, 2023
25
May, 2022
17
September, 2020
13
August, 2017
13
September, 2018
7
July, 2018
6
February, 2021
5
August, 2020
3
April, 2018
2
August, 2018
1
October, 2022
Available data
93
fastq
39
bigWig
38
bam
28
tsv
25
zippedFastqFolder
10
bed narrowPeak
3
bigBed narrowPeak
1
bedpe bed3+
1
cool
1
hic
Organism
119
Homo sapiens
Biosample type
119
primary cell
Organ
119
epithelium
119
pancreas
Project
81
HPAP
38
AMP
Genome assembly (visualization)
39
GRCh38
33
hg19
Lab
81
Klaus Kaestner, Upenn
38
AMP-T2D consortium
Audit category:
1
audit script error
Audit category:
2
inconsistent control read length
files.read_length!
50
BIOSAMPLE
ASSAY
119 results
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total RNA-seq
WGBS
ChIP-seq
single cell RNA-seq
ATAC-seq
Hi-C
primary cell
pancreatic alpha cell
52
31
13
12
10
1
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