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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
total RNA-seq
31
WGBS
28
ATAC-seq
13
ChIP-seq
12
single cell RNA-seq
1
Hi-C
Assay category
64
Transcription
31
DNA methylation
28
DNA accessibility
13
DNA binding
1
3D chromatin structure
Target of assay
7
histone
7
histone modification
6
control
4
narrow histone mark
3
broad histone mark
Date released
47
May, 2022
27
February, 2023
15
September, 2020
14
August, 2017
13
September, 2018
7
July, 2018
6
February, 2021
3
April, 2018
2
August, 2018
2
September, 2017
1
October, 2022
Available data
89
fastq
47
zippedFastqFolder
41
bam
35
bigWig
28
tsv
13
bed narrowPeak
6
bigBed narrowPeak
1
bedpe bed3+
1
cool
1
hic
Organism
137
Homo sapiens
Biosample type
137
primary cell
Organ
137
epithelium
137
pancreas
Project
96
HPAP
41
AMP
Genome assembly (visualization)
36
hg19
35
GRCh38
Lab
96
Klaus Kaestner, Upenn
41
AMP-T2D consortium
Audit category:
1
audit script error
Audit category:
2
inconsistent control read length
files.read_length!
76
BIOSAMPLE
ASSAY
137 results
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total RNA-seq
WGBS
ATAC-seq
ChIP-seq
single cell RNA-seq
Hi-C
primary cell
pancreatic alpha cell
52
31
28
13
12
1
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