Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 35ATAC-seq
  • 31WGBS
  • 10total RNA-seq
  • 2single cell RNA-seq
  • 1Hi-C
Assay category
  • 35DNA accessibility
  • 31DNA methylation
  • 12Transcription
  • 13D chromatin structure
Date released
  • 47May, 2022
  • 13September, 2018
  • 6February, 2021
  • 5August, 2020
  • 2September, 2017
  • 2September, 2020
  • 1April, 2018
  • 1August, 2017
  • 1July, 2018
  • 1October, 2022
Available data
  • 47zippedFastqFolder
  • 31fastq
  • 25bigWig
  • 18bam
  • 18tsv
  • 6bed narrowPeak
  • 6bigBed narrowPeak
  • 1bedpe bed3+
  • 1cool
  • 1hic
Organism
  • 79Homo sapiens
Biosample type
  • 79primary cell
Organ
  • 79epithelium
  • 79pancreas
Project
  • 61HPAP
  • 18AMP
Genome assembly (visualization)
  • 25GRCh38
  • 19hg19
Lab
  • 61Klaus Kaestner, Upenn
  • 18AMP-T2D consortium
Audit category:
  • 1audit script error
files.run_type!
  • single-ended
BIOSAMPLE
ASSAY

79 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
WGBS
total RNA-seq
single cell RNA-seq
Hi-C
primary cell
pancreatic alpha cell35311021
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego