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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
31
WGBS
25
total RNA-seq
13
ChIP-seq
12
single cell RNA-seq
1
Hi-C
Assay category
37
Transcription
35
DNA accessibility
31
DNA methylation
13
DNA binding
1
3D chromatin structure
Target of assay
7
histone
7
histone modification
6
control
4
narrow histone mark
3
broad histone mark
Date released
47
May, 2022
February, 2023
17
September, 2020
14
August, 2017
13
September, 2018
7
July, 2018
6
February, 2021
5
August, 2020
3
April, 2018
2
August, 2018
2
September, 2017
1
October, 2022
Available data
69
fastq
47
zippedFastqFolder
42
bigWig
41
bam
28
tsv
13
bed narrowPeak
6
bigBed narrowPeak
1
bedpe bed3+
1
cool
1
hic
Organism
117
Homo sapiens
Biosample type
117
primary cell
Organ
117
epithelium
117
pancreas
Project
76
HPAP
41
AMP
Genome assembly (visualization)
42
GRCh38
36
hg19
Lab
76
Klaus Kaestner, Upenn
41
AMP-T2D consortium
Audit category:
1
audit script error
Audit category:
2
inconsistent control read length
month_released!
February, 2023
BIOSAMPLE
ASSAY
117 results
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ATAC-seq
WGBS
total RNA-seq
ChIP-seq
single cell RNA-seq
Hi-C
primary cell
pancreatic alpha cell
35
31
25
13
12
1
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