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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
total RNA-seq
32
ATAC-seq
31
WGBS
13
ChIP-seq
12
single cell RNA-seq
1
Hi-C
Assay category
54
Transcription
32
DNA accessibility
31
DNA methylation
13
DNA binding
1
3D chromatin structure
Target of assay
7
histone
7
histone modification
6
control
4
narrow histone mark
3
broad histone mark
Date released
47
May, 2022
27
February, 2023
17
September, 2020
14
August, 2017
September, 2018
7
July, 2018
6
February, 2021
5
August, 2020
3
April, 2018
2
August, 2018
2
September, 2017
1
October, 2022
Available data
83
fastq
47
zippedFastqFolder
29
bigWig
28
bam
18
tsv
10
bed narrowPeak
3
bigBed narrowPeak
1
bedpe bed3+
1
cool
1
hic
Organism
131
Homo sapiens
Biosample type
131
primary cell
Organ
131
epithelium
131
pancreas
Project
103
HPAP
28
AMP
Genome assembly (visualization)
29
GRCh38
23
hg19
Lab
103
Klaus Kaestner, Upenn
28
AMP-T2D consortium
Audit category:
1
audit script error
Audit category:
2
inconsistent control read length
month_released!
September, 2018
BIOSAMPLE
ASSAY
131 results
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total RNA-seq
ATAC-seq
WGBS
ChIP-seq
single cell RNA-seq
Hi-C
primary cell
pancreatic alpha cell
42
32
31
13
12
1
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