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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ATAC-seq
21
total RNA-seq
16
WGBS
13
ChIP-seq
12
single cell RNA-seq
1
Hi-C
Assay category
33
Transcription
21
DNA accessibility
16
DNA methylation
13
DNA binding
1
3D chromatin structure
Target of assay
7
histone
7
histone modification
6
control
4
narrow histone mark
3
broad histone mark
Date released
29
May, 2022
14
August, 2017
14
September, 2018
10
February, 2023
9
July, 2018
3
April, 2018
August, 2020
2
September, 2017
2
September, 2020
1
October, 2022
Available data
54
fastq
42
bam
37
bigWig
29
zippedFastqFolder
22
tsv
14
bed narrowPeak
7
bigBed narrowPeak
1
bedpe bed3+
1
cool
1
hic
Organism
84
Homo sapiens
Biosample type
84
primary cell
Organ
84
epithelium
84
pancreas
Project
42
AMP
42
HPAP
Genome assembly (visualization)
37
GRCh38
37
hg19
Lab
42
AMP-T2D consortium
42
Klaus Kaestner, Upenn
Audit category:
1
audit script error
Audit category:
2
inconsistent control read length
biosample_type!
tissue
month_released!
August, 2020
BIOSAMPLE
ASSAY
84 results
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ATAC-seq
total RNA-seq
WGBS
ChIP-seq
single cell RNA-seq
Hi-C
primary cell
pancreatic beta cell
21
21
16
13
12
1
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