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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
total RNA-seq
16
ATAC-seq
16
WGBS
13
ChIP-seq
12
single cell RNA-seq
1
Hi-C
Assay category
33
Transcription
16
DNA accessibility
16
DNA methylation
13
DNA binding
1
3D chromatin structure
Target of assay
7
histone
7
histone modification
6
control
4
narrow histone mark
3
broad histone mark
Date released
29
May, 2022
13
August, 2017
10
February, 2023
10
September, 2018
9
July, 2018
3
April, 2018
2
August, 2020
2
September, 2020
1
October, 2022
Available data
56
fastq
42
bam
39
bigWig
29
zippedFastqFolder
22
tsv
14
bed narrowPeak
bigBed narrowPeak
1
bedpe bed3+
1
cool
1
hic
Organism
79
Homo sapiens
Biosample type
79
primary cell
Organ
79
epithelium
79
pancreas
Project
44
HPAP
35
AMP
Genome assembly (visualization)
32
GRCh38
30
hg19
Lab
44
Klaus Kaestner, Upenn
35
AMP-T2D consortium
Audit category:
1
audit script error
Audit category:
2
inconsistent control read length
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
79 results
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total RNA-seq
ATAC-seq
WGBS
ChIP-seq
single cell RNA-seq
Hi-C
primary cell
pancreatic beta cell
21
16
16
13
12
1
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